Lab Notebook

(Introduction)

Coding

  • cboettig pushed to source at cboettig/cboettig.github.io: build 03:20 2015/04/21
  • cboettig pushed to source at cboettig/cboettig.github.io: fix dockerfile 11:46 2015/04/20
  • cboettig pushed to source at cboettig/cboettig.github.io: build 11:32 2015/04/20
  • cboettig pushed to master at cboettig/2015: new blog post, also still testing on kalman exploration 11:30 2015/04/20
  • cboettig closed issue ropensci/rfishbase#38: validate_names returns array of suggestions errantly 09:40 2015/04/20

Discussing

  • @JennyBryan (Other than perhaps increasing the number of git commands that will work with copy-paste from some stackoverflow page ;-)

    11:45 2015/04/20
  • @JennyBryan so in a sense, this convention comes from git itself, but otherwise there's no reason to stick with it http://t.co/rJlxHutRdi

    11:43 2015/04/20
  • @JennyBryan "origin" is the default name git clone creates for a remote; just as "master" is the default name of git init

    11:42 2015/04/20
  • @Erika_Check certainly! I think the piece came together very nicely

    12:26 2015/04/16
  • and great to see @UCDavis PhD student @CieraReports as a leading voice for reproducible research in this @Nature piece!

    09:16 2015/04/15

Reading

  • The importance of individual developmental variation in stage-structured population models: Ecology Letters (2014). Volume: 17, Issue: 8. Pages: 1026-1038. Perry de Valpine, Katherine Scranton, Jonas Knape, Karthik Ram, Nicholas J. Mills et al. 01:01 2015/04/10
  • Eluding catastrophic shifts: Proceedings of the National Academy of Sciences (2015). Pages: 201414708. Paula Villa Martín, Juan a. Bonachela, Simon a. Levin, Miguel a. Muñoz et al. 01:01 2015/04/10
  • Fitting complex population models by combining particle filters with Markov chain Monte Carlo: Ecology (2012). Volume: 93, Issue: 2. Pages: 256-263. Jonas Knape, Perry De Valpine et al. 01:01 2015/04/10
  • Regime shifts, thresholds and multiple stable states in freshwater ecosystems; a critical appraisal of the evidence: Science of The Total Environment (2015). Samantha J. Capon, a. Jasmyn J. Lynch, Nick Bond, Bruce C. Chessman, Jenny Davis, Nick Davidson, Max Finlayson, Peter a. Gell, David Hohnberg, Chris Humphrey, Richard T. Kingsford, Daryl Nielsen, James R. Thomson, Keith Ward, Ralph Mac Nally et al. 01:01 2015/04/10