Mostly getting Prosecutor’s Fallacy example to run with large enough sample sizes. Finer sampling or more replicates than current settings seems to crash MPI connections over farm cluster, probably a memory issue. Oh well, looks like I’ve got a good enough sample size here.
Citations on Jekyll
No ideal solution here at the moment, a couple options:
- Pandoc: My intended solution, Disadvantages: converts everything to it’s own markdown format, which messes up my PHP Markdown tables and YAML frontmatter. Also chokes on large bibtex files, so I need to run bibtool / my bibgen script to generate the bib file first. Perhaps a scripted solution can get around this.
- Use knit+R to generate citations with my knitcitations package. Advantages: customizable, can run on DOIs without needing to bother with bibtex. Easiest to extend with metadata in citations, such as CiTO. Disadvantages: not very polished, citation formating needs help.
- jekyll-scholar: Perhaps the most promising of the citation plugins.